Name: RenLab-HiC-cortex Rep2
Organism: Mus musculus
Source: Mouse cortex
RE: HindIII
Sample ID: GSM938751
| File | SRR501778 | SRR501779 | SRR501780 | SRR501781 |
|---|---|---|---|---|
| Total reads | 71,618,558 | 75,690,699 | 73,922,632 | 73,531,610 |
| First pair aligned | 64,063,239 (89.45%) | 67,071,703 (88.61%) | 65,828,103 (89.05%) | 65,804,756 (89.49%) |
| Second pair aligned | 62,699,476 (87.55%) | 66,402,127 (87.73%) | 65,014,114 (87.95%) | 65,096,461 (88.53%) |
| PCR duplicate paired reads | 2,751,941 (3.84%) | 3,008,362 (3.97%) | 2,928,604 (3.96%) | 2,953,832 (4.02%) |
| Chimeric paired reads | 0 (0.00%) | 0 (0.00%) | 0 (0.00%) | 0 (0.00%) |
| Valid chimeric paired reads | 0 (0.00%) | 0 (0.00%) | 0 (0.00%) | 0 (0.00%) |
| Total mapped/paired reads | 41,728,375 (58.26%) | 43,982,753 (58.11%) | 43,171,696 (58.40%) | 43,152,393 (58.69%) |
| Valid mapped/paired reads | 38,976,434 (54.42%) | 40,974,391 (54.13%) | 40,243,092 (54.44%) | 40,198,561 (54.67%) |
| Total reads | 160,392,478 |
| Chromosome not in fends | 0 (0.00%) |
| PCR duplicates | 0 (0.00%) |
| Outide RE cutsite range | 1,470,056 (0.92%) |
| Insert larger than cutoff | 53,690,259 (33.47%) |
| Fragment circularization | 2,011,195 (1.25%) |
| Possible failed RE digest | 12,803,093 (7.98%) |
| Valid cis reads | 32,188,669 (20.07%) |
| Valid trans reads | 58,229,206 (36.30%) |
| Unique cis fend pairs | 26,083,749 |
| Unique trans fend pairs | 49,336,363 |